Friday, August 3, 2012

How the Blind Watchmaker Made Eyes


How the Blind Watchmaker Made Eyes

by Donald R. Prothero
Since the days of Darwin, eyes and evolution have been an irresistible topic for scientists and amateur authors alike. British biologist St. George Jackson Mivart was initially a supporter of Darwin, but when his Catholic religion caused conflict with Thomas Henry Huxley in 1871, he changed to a critic. Mivart’s critique focused on the issue of the perfection of the human eye and how he could not fathom how it could have evolved by natural selection and random chance (a point still raised by creationists today who know nothing about comparative biology).
In later editions of On the Origin of Species, Darwin specifically addressed Mivart’s criticism and carefully explained how the incipient stages of complex structures like the eye could be useful, and could have evolved by small steps; it did not require a giant leap to the complexity to develop the human eye. As Darwin first showed, nature is full of examples of every kind of photoreceptor, from simple light-sensitive cells to eyespots to simple eyes with no lenses, to a variety of solutions of seeing with more and more complex eyes. Once you arrange these solutions in an array, it is only a small step from one to the next, more complex eye. (Indeed, many animals actually show this transition during their embryonic development as their eyes change, and in some organisms, the eyes develop differently in males and females). In fact, the passages where Darwin talks about the eye are one of the most frequently “quote mined” by creationists trying to distort Darwin’s meaning, because they quote only the beginning of the paragraph were Darwin is setting up the creationist position in order to shoot it down the in the rest of the passage (which creationists never quote). Here is the first section that creationists quote (On the Origin of Species, 6th ed., 1872, 143–144):
To suppose that the eye, with all its inimitable contrivances for adjusting the focus to different distances, for admitting different amounts of light, and for the correction of spherical and chromatic aberration, could have been formed by natural selection, seems, I freely confess, absurd in the highest possible degree.
Here is the rest of the quote that creationists conveniently leave out:
Yet reason tells me, that if numerous gradations from a perfect and complex eye to one very imperfect and simple, each grade being useful to its possessor, can be shown to exist; if further, the eye does vary ever so slightly, and the variations be inherited, which is certainly the case; and if any variation or modification in the organ be ever useful to an animal under changing conditions of life, then the difficulty of believing that a perfect and complex eye could be formed by natural selection, though insuperable by our imagination, can hardly be considered real. How a nerve comes to be sensitive to light, hardly concerns us more than how life itself first originated; but I may remark that several facts make me suspect that any sensitive nerve may be rendered sensitive to light, and likewise to those coarser vibrations of the air which produce sound.
The rest of Darwin’s chapter goes into great depth describing the full range of photoreceptor solutions in the animal kingdom, which creationists also conveniently fail to address.
Fast-forward 153 years later to the culmination of this line of argument, represented by Ivan Schwab’s outstanding book Evolution’s Witness: How Eyes Evolved. There have been a number of scientific papers that have expanded on Darwin’s comparative sequence of ocular solutions, but none in the beautiful full-color coffee-table book format that extensively reviews photoreception across all of biology, as does Schwab’s book. Schwab is a professor of ophthalmology at University of California Davis, so he knows eyes in a way that few biologists do, but he also takes great trouble to study and image photoreceptors from nearly every group of living organisms. The book shows not only spectacular color photographs of a wide range of organisms and close-ups of their eyes, but many images of histological sections through the eyes and head (done by Richard Dubielzig, DVM), color reconstructions of prehistoric animals by renowned paleoartist John Sibbick, and microphotography of eye histology. Detailed discussions of the eye anatomy of many key living organisms are provided, along with speculation about the eye anatomy of fossils with excellent preservation. Some, like trilobites, have preserved their crystal calcite lenses unaltered, so we can actually see what they could see. The anatomical discussion might be heavy going for those without any background in biology, but the author provides excellent diagrams and definitions of every anatomical term, plus a glossary, so those who wish to dig in and learn the material will be rewarded.
The book also attempts not just a comparative biology exercise, but a fully chronological account of the geological factors that were in play when each type of eye arose prehistorically. Thus, rather than running through the full gamut of eye types in, say, phylum Arthropoda or phylum Chordata, the chapters jump from the kinds of eyes that existed in invertebrates of a given geological period to the contemporary vertebrates, and back again. This exposition may be a little hard to follow for some readers, but it does allow one to see when each type of eye arose and under what geological conditions. Thus, we can better understand, for example, how 300 m.y. old Carboniferous dragonflies with wingspans almost 3 feet across had eyes the size of golf balls! They, like the 9-foot Arthropleura (a sowbug relative on steroids) or the foot-long cockroaches of this period, were able to grow so large because atmospheric oxygen levels at that time were much higher; oxygen is a critical limiting factor not only for arthropod growth, but especially for eye development. Elsewhere, he describes the amazing dolphin-like marine reptiles known as ichthyosaurs, some of which had eyes the size of beach balls, the largest eyes ever known. These animals apparently were divers into the dark depths of the oceans where they must have hunted prey (possibly large squid like modern sperm whales hunt) that live at such depths.
Schwab begins at the beginning of the simplest life forms, discussing the chemicals and pigments found even in bacteria and algae, and how many (besides chlorophyll) are sensitive to light. He shows how some non-photosynthetic light-sensitive pigments have non-light-sensitive precursors, and evolved before the advent of photoreceptors, then were later co-opted for light sensitivity. Schwab goes into the recent research on evolutionary development of eyes, and how certain genes turn on or off expression of certain eye features, or even the entire eye. He reminds us how many animals have no need for sensitivity to light at all, let alone photoreceptors or eyes, and dispels our anthropomorphic notion that eyes are essential to evolutionary success.
In discussing the appearance of the first real eyes of the trilobites in the Cambrian, Schwab does not make the mistake that Andrew Parker made in his 2004 book In the Blink of an Eye: How Vision Caused the Big Bang of Evolution. Parker’s book was excoriated in the scientific community, not only for its execrable writing style and lack of proper references, but for the even simpler reason that the “Cambrian explosion” was no “explosion” (it took at least 20–80 million years in a series of steps) and that the trilobites and their eyes were one of the last events in this long slow process, so they are unlikely to have caused anything more than the late radiation of more trilobites.
Finally, in his review of cephalopod eyes, Schwab shows how the structure of the fluid-filled eyeball of an octopus evolved independently in that lineage and in the vertebrates—but the octopus eye is actually designed better than our eye! It has no “blind spot” in the retina caused by the exit of the optic nerve, and its layers of photoreceptors are not buried under several other layers of cells, distorting the vision, as our retinas are. The next time you run into a creationist who rhapsodizes about how beautifully designed nature is, remind them of the flawed construction of our eyes compared to that of an octopus or squid, and ask what that tells them about the Designer!
In a project this large in scope, small errors are bound to creep in, especially in areas far from the author’s expertise in eye anatomy. For example, he mentions the discredited notion that a meteorite impact might have something to do with the great Permian extinction; he follows the controversial idea that turtles are nested within Diapsida; but he retains the outdated notions that mesonychids are closer relatives of whales than hippos and other artiodactyls. These can be forgiven, because the author is making an attempt to reach across disciplines and paint a broad picture in a geological context, and such an effort is hard for anyone, regardless of specialty, to manage.
In the broader sense, the entire book is an outstanding antidote to scientific ignorance and creationist lies. It is beautifully written and illustrated, yet the writing is accessible to anyone with some biology background and a willingness to follow the details carefully. The evidence for evolution screams out at you page after page. Like Darwin did in 1859, Schwab pounds the case home with example after example in a way that no creationist can rebut. Among the overwhelmingly positive reviews the book has received in the professional journals and on the Internet, there are three pathetic one-sentence negative reviews by creationist trolls on the book’s Amazon.com page, which clearly show that they didn’t actually read the book and could not comprehend it. Indeed, one of them admits that he gave a bad review to the book after only reading the “look inside” feature on the Amazon.com site and skimming the few pages that are presented. If that doesn’t summarize creationist “scholarship” in a nutshell, nothing does! END
About the Author of this Review
photo
DR. DONALD R. PROTHERO was Professor of Geology at Occidental College in Los Angeles, and Lecturer in Geobiology at the California Institute of Technology in Pasadena. He earned M.A., M.Phil., and Ph.D. degrees in geological sciences from Columbia University in 1982, and a B.A. in geology and biology (highest honors, Phi Beta Kappa) from the University of California, Riverside. He is currently the author, co-author, editor, or co-editor of 32 books and over 250 scientific papers, including five leading geology textbooks and five trade books as well as edited symposium volumes and other technical works. He is on the editorial board of Skeptic magazine, and in the past has served as an associate or technical editor for GeologyPaleobiology and Journal of Paleontology. He is a Fellow of the Geological Society of America, the Paleontological Society, and the Linnaean Society of London, and has also received fellowships from the Guggenheim Foundation and the National Science Foundation. He has served as the President and Vice President of the Pacific Section of SEPM (Society of Sedimentary Geology), and five years as the Program Chair for the Society of Vertebrate Paleontology. In 1991, he received the Schuchert Award of the Paleontological Society for the outstanding paleontologist under the age of 40. He has also been featured on several television documentaries, including episodes of Paleoworld (BBC), Prehistoric Monsters Revealed (History Channel), Entelodon and Hyaenodon (National Geographic Channel) and Walking with Prehistoric Beasts (BBC). His website is: www.donaldprothero.com. Check out Donald Prothero’s pageat Shop Skeptic.

Monday, July 9, 2012

What would disprove evolution? « Why Evolution Is True

"If evolution is a scientific theory worth its salt, then there must be some conceivable observations that could show it to be wrong. I just wanted to put down, for the record, what some of those observations might be. First, let’s reprise what I see as the major components of the theory of evolution."
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11 Eye-Opening Highlights From a Creationist Science Textbook - 11Points.com



A few months ago, I was reading about homeschooling, because I do things like randomly reading about homeschooling. I read an article that mentioned a family using science textbooks produced by Bob Jones University. (If you're not familiar, that's a large, for-profit, evangelical Christian university in South Carolina.) I had to see what one of those textbooks was like. I bought one for a few bucks on Amazon and a few slow shipping weeks later, I had my answer. 

I purchased a copy of Science 4 for Christian Schools, an evangelical-written and -approved science textbook published in 1990. According to the stamp on the inside cover, my copy was previously owned by The Country Church & Country Christian School in Molella, Oregon. So, thanks guys!
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'via Blog this'

Tuesday, May 15, 2012

8 Humanlike Behaviors of Primates via Live Science

While we lost most of our body hair and bulked up our brains, humans are evolutionarily close to other great apes, with about 97 percent of our genes DNA matching up. Beyond looks, researchers have found a startling number of humanlike behaviors practiced by our ape ancestors.
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Did a Copying Mistake Build Man's Brain? via Live Science


A copying error appears to be responsible for critical features of the human brain that distinguish us from our closest primate kin, new research finds.
When tested out in mice, researchers found this "error" caused the rodents' brain cells to move into place faster and enabled more connections between brain cells.
When any cell divides, it first copies its entire genome. During this process, it can make errors. The cell usually fixes errors in the DNA. But when they aren't fixed, they become permanent changes called mutations, which are sometimes hurtful and sometimes helpful, though usually innocuous.
One type of error is duplication, when the DNA-copying machinery accidentally copies a section of the genome twice. The second copy can be changed in future copies — gainingmutations or losing parts.
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The “Tornado in a Junkyard” Fallacy via Science-Based Life


As a promoter of science literacy and therefore the theory of evolution, I often get some push back from those who are either unaware of the tenets of the theory, or are straight up opposed to it.
One of the most common arguments is to say that evolution is impossible, because evolving something as complex as the human eye, for example, would be “like a tornado going through a junkyard and creating a 747.” This is meant to imply that creating a complex structure is impossible by chance, and therefore that there had to be some “intelligent design” to the process.
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Stupid Design via Science Based Life

Does our world seem so perfect to you that it had to be created? Was then there some all-powerful designer that created beauty intertwining with complexity, or are we simply ignoring all of the evidence that shows that the universe is certainly not adapted for us? Getting caught up in our sensory interpretations of elegance blinds us from the cold reality of a hostile existence (not intelligently designed or designed for us). When proponents of so-called “intelligent design” make this complexity and beauty argument, they are hopelessly shortsighted in their view of an anthropocentric universe. What we will look at below are facts about the universe, our planet, and about humans that make “intelligent design” or a universe crafted with humans in mind seem nonsensical.
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Wednesday, April 18, 2012

Genetic adaptation of fat metabolism key to development of human brain-Science Daily

About 300,000 years ago humans adapted genetically to be able to produce larger amounts of Omega-3 and Omega-6 fatty acids. This adaptation may have been crucial to the development of the unique brain capacity in modern humans. In today’s life situation, this genetic adaptation contributes instead to a higher risk of developing disorders like cardiovascular disease.
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Sunday, March 25, 2012

God Said Stars Are Made from Water?--Exposing PseudoAstronomy

God Said Stars Are Made from Water?:
This is a quick post that is kinda another “WTF?” post from something that the young-Earth creationist (YEC) Institute for Creation Research’s (ICR) “science” writer Brian Thomas put out in his article, “What Causes a Galaxy’s Magnetism?
About the first two-thirds of the article is basically parroting a press release about a new map of the Galaxy’s magnetic field. The jist of the press release is that a team of astronomers has mapped our galaxy’s magnetic field to higher precision and accuracy than had been done previously with an eye towards studying extragalactic magnetic fields: you need to know what’s in the way before you can figure out what’s going on with a far-off object. It can also act, over time, on slightly magnetized dust and gas within the galaxy.
But – gasp! – we don’t know why the Galaxy has a magnetic field to begin with! As the ICR article states, “Secular astronomers are no closer to understanding what could cause galactic magnetic fields than they were when they first detected the fields over a century ago.” (That’s the first sentence of the article.) You kinda know what’s coming next … a God of the Gaps argument.
From what I can tell – and this is WAY outside of my field so if any astronomer who knows more about this reads this post, please post in the Comments – the statement is true that we don’t really know what caused the Galaxy’s magnetic field to form in the first place. But, a very recent article has an idea that it may have formed from a background field “seed” that became stronger as the Galaxy formed. So it’s not like we’re totally ign’ant, there are ideas out there.
But no, apparently that’s not good enough. Creationists have to figure it out from the Bible, and …
“In 2008, physicist D. Russell Humphreys proposed a Bible-centered model for the origin of magnetic fields that is consistent with the overall strength of the spiral Milky Way’s magnetic field. If God formed the stars and galaxies during the fourth day of creation using water that He had created earlier, and if those water molecules were all originally aligned, their tiny magnetic fields would have combined to form a galactic magnetic field that has decayed to something that looks like today’s observed field strength.”
Yup, that’s right. The premise of this creationist proposal is that stars are made from water. I really don’t think anything else needs to be said at this point.